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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015923346.1_cds_XP_016471977.1_64256
CDS Infomation

[gene=LOC107794034] [db_xref=GeneID:107794034] [protein=isochorismate synthase, chloroplastic-like isoform X4] [protein_id=XP_016471977.1] [location=join(65535..65660,65738..65935,72626..72861,76180..76297,76398..76514,76626..76772,76984..77058,77147..77215,77967..78085,78182..78239,78499..78609,78885..78969,79347..79444,79852..79944,80089..80164,81233..81240)] [gbkey=CDS]
Sequence

ATGTTAATGGCTGTTGGTGCAAAGCACTGCACTCTACGTGAGTCATCACTCGTGAAATGG
TCGCTCTTGTCTTCTCCTCTCTATGGAATTGGAAAGCAGTCTATTCATTTCTCCAACTCT
AACCAAAGATCATATCATCAGTCTTGTTCATTGTCAATGAATGGGTGCCAAGGCGACCCA
AGAGCTCCTATTGGAACCATAGAAACAAGAACGTTGCCTGCAGTTTCTAGCCCTGCATTG
GCCATGGAACGTCTCAATTCCGCCATCTGTGACTTGGTTAACTCCCAGCCTCCTCCTTAC
AATTCCGGTATCATTCGTCTTGAGGTGCCAATTGAAGAGCAGATAGAAGCGCTTGAGTGG
CTTCATGCTCAGAACCATGTCCTCCTCCCGCGCTGTTTCTTCTCCGGTCGAAGGCCAGCT
GTTGATTCTGAAATGTGCTTTATTGGGAATGGAACTTCTCATTCCTCTTCTAAAGTGGTC
AGTGTAGCTGGTATCGGCTCTGCTGTCTTCTTTACTCATTTACGCCCTTTCTCCTTTGAC
GATTGGCGTGCTATACGCAGGTACCTCTCCAAGAAATGTCCTCTAATTCGTGCTTATGGG
GCAATCCGATTTGATGCAACAGCCAATATAGGTCCTGAATGGAATGCTTTTGGTTCATTT
TATTTCATGGTCCCTCAGGTTGAGTTTGATGAGCTTGAAGGAAGTTCAGTTATTGCTGCA
ACAGTCGCATGGGATAATGCTGTCTCTTGCACGTACCAGAGGGCAATAGAAGCACTTCAG
ACCACAATATGGCAGGTTTCCTCCGTTCTTATGAGGGTGCGGAAAAAAATATCTCGTTCG
CATATACTCGCAAGTACTCATGTCCCGGGTAAAGCATCTTGGGACCAAGCTGTTAAGCGT
GCTTTGCAAATAATAAGAAGAAACAACCCGATGCTTATCAAGGTGGTACTTGCTCGTAGC
ACCAGAGTTGTGACAGCTGCGGACATTGATCCTTTAACATGGTTATCTTGCTTAAAGGTT
GAAGGAGAAAATGCATATCAGTTCTGTTTGCAACCTCCCCAGTCAGCGGCATTCATTGGA
AACACTCCAGAGCAGCTATTTCATCGGGACTGCCTCAGCATTTGTAGCGAGGCTTTAGCT
GGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAAGATAGGACAGGATTTACTA
TCCAGTGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAAATTG
GAGGCTGTATGTTCCAGCGTTTTAATTGAACCAAAGAAAGCAATAAGAAAATTTCCAAGA
GTTCAACATCTTTATGCTCAATTGAGGGGGAGACTCCAGACTGAAGATGATGAGTTTAAG
ATCTTGTCGTCCATTCACCCTACTCCAGCAGTTTGTGGGTATCCTACAGAAGATGCACGG
GCTTTTATTTCAGAAACCGAAATGTTTGACCGAGGAATGTATGCTGGTCCTGTTGGTTGG
TTTGGAGGGGAAGAGAGTGAATTTGCTGTTGGAATAAGGTCAGCTTTGGTTGACAAGGGT
CTTGGCGCATTAATTTATGCGGGAACTGGGATAGTGGAAGGAAGTGATTCATCTCTAGAA
TGGGAGGAGCTCGAGCTGAAGACTTCACAGTTCACCAAATTGATGAAACTTGAGGCTCCT
CTTTTGACAAGAGGAGAAATTAGGACTATCAATCAGAATCAGAAAGTGAGATGA

Peptide Sequence

PEP ID

XP_016471977.1
PEP Infomation

PREDICTED: isochorismate synthase, chloroplastic-like isoform X4 [Nicotiana tabacum]
Sequence

MLMAVGAKHCTLRESSLVKWSLLSSPLYGIGKQSIHFSNSNQRSYHQSCSLSMNGCQGDP
RAPIGTIETRTLPAVSSPALAMERLNSAICDLVNSQPPPYNSGIIRLEVPIEEQIEALEW
LHAQNHVLLPRCFFSGRRPAVDSEMCFIGNGTSHSSSKVVSVAGIGSAVFFTHLRPFSFD
DWRAIRRYLSKKCPLIRAYGAIRFDATANIGPEWNAFGSFYFMVPQVEFDELEGSSVIAA
TVAWDNAVSCTYQRAIEALQTTIWQVSSVLMRVRKKISRSHILASTHVPGKASWDQAVKR
ALQIIRRNNPMLIKVVLARSTRVVTAADIDPLTWLSCLKVEGENAYQFCLQPPQSAAFIG
NTPEQLFHRDCLSICSEALAGTRARGGSELLDLKIGQDLLSSAKDHNEFAIVRECIRRKL
EAVCSSVLIEPKKAIRKFPRVQHLYAQLRGRLQTEDDEFKILSSIHPTPAVCGYPTEDAR
AFISETEMFDRGMYAGPVGWFGGEESEFAVGIRSALVDKGLGALIYAGTGIVEGSDSSLE
WEELELKTSQFTKLMKLEAPLLTRGEIRTINQNQKVR

Transcript Sequence

Gene sequence data has not been registered.